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ISNI: 
0000 0001 3834 339X
Name: 
Eisen, J. A.
Eisen, Jonathan A.
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Titles: 
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.
Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola.
age of the Arabidopsis thaliana genome duplication., The
Analysis of Deinococcus radiodurans's Transcriptional Response to Ionizing Radiation and Desiccation Reveals Novel Proteins That Contribute to Extreme Radioresistance
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Assembling the Marine Metagenome, One Cell at a Time
Assessing evolutionary relationships among microbes from whole genome analysis
Automated Phylogenetic Tree-Based S mall Subunit rRNA T axonomy and A lignment P ipeline (STAP), An
automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP)., An
BioTorrents: a file sharing service for scientific data.
Brouhaha over the other yeast
Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts., The
Calyptogena magnifica Chemoautotrophic Symbiont Genome, The
case for evolutionary genomics and the comprehensive examination of sequence biodiversity., A
Characterization of Bacterial Communities Associated with Deep-Sea Corals on Gulf of Alaska Seamounts
Cloning and Characterization of HARP/SMARCAL1: A Prokaryotic HepA-Related SNF2 Helicase Protein from Human and Mouse
Comparative genomics and understanding of microbial biology.
Comparative genomics of emerging human ehrlichiosis agents.
Comparative studies of resistin expression and phylogenomics in human and mouse.
Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes.
Complete Genome of Teredinibacter turnerae T7901: An Intracellular Endosymbiont of Marine Wood-Boring Bivalves (Shipworms), The
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae.
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.
Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288).
Complete genome sequence of Acidaminococcus fermentans type strain (VR4).
Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP).
Complete genome sequence of Actinosynnema mirum type strain (101).
Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA).
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1).
Complete genome sequence of Anaerococcus prevotii type strain (PC1).
Complete genome sequence of Arcanobacterium haemolyticum type strain (11018).
Complete genome sequence of Archaeoglobus profundus type strain (AV18).
Complete genome sequence of Arcobacter nitrofigilis type strain (CI).
Complete genome sequence of Atopobium parvulum type strain (IPP 1246).
Complete genome sequence of Bacteroides helcogenes type strain (P 36-108).
Complete genome sequence of Bacteroides salanitronis type strain (BL78).
Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122).
Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).
Complete genome sequence of Brachyspira murdochii type strain (56-150).
Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1).
Complete genome sequence of Candidatus Ruthia magnifica.
Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).
Complete genome sequence of Catenulispora acidiphila type strain (ID 139908).
Complete genome sequence of Caulobacter crescentus.
Complete genome sequence of Cellulomonas flavigena type strain (134).
Complete genome sequence of Cellulophaga algicola type strain (IC166).
Complete genome sequence of Cellulophaga lytica type strain (LIM-21).
Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034).
complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium., The
Complete genome sequence of Conexibacter woesei type strain (ID131577).
Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24).
Complete genome sequence of Cryptobacterium curtum type strain (12-3).
Complete genome sequence of Deinococcus maricopensis type strain (LB-34).
Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460).
Complete genome sequence of Desulfarculus baarsii type strain (2st14).
Complete genome sequence of Desulfobulbus propionicus type strain (1pr3).
Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)).
Complete genome sequence of Desulfomicrobium baculatum type strain (X).
Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575).
Complete genome sequence of Desulfurococcus mucosus type strain (O7/1).
Complete genome sequence of Dyadobacter fermentans type strain (NS114).
Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255).
Complete genome sequence of Ferrimonas balearica type strain (PAT).
Complete genome sequence of Geodermatophilus obscurus type strain (G-20).
Complete genome sequence of Gordonia bronchialis type strain (3410).
Complete genome sequence of Haliangium ochraceum type strain (SMP-2).
complete genome sequence of Haloferax volcanii DS2, a model archaeon., The
Complete genome sequence of Halogeometricum borinquense type strain (PR3).
Complete genome sequence of Halomicrobium mukohataei type strain (arg-2).
Complete genome sequence of Halorhabdus utahensis type strain (AX-2).
Complete genome sequence of Haloterrigena turkmenica type strain (4k).
Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).
Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1).
Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1).
Complete genome sequence of Intrasporangium calvum type strain (7 KIP).
Complete genome sequence of Isosphaera pallida type strain (IS1B).
Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134).
Complete genome sequence of Kangiella koreensis type strain (SW-125).
Complete genome sequence of Kribbella flavida type strain (IFO 14399).
Complete genome sequence of Kytococcus sedentarius type strain (541).
Complete genome sequence of Leadbetterella byssophila type strain (4M15).
Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b).
Complete genome sequence of Marivirga tractuosa type strain (H-43).
Complete genome sequence of Meiothermus ruber type strain (21).
Complete genome sequence of Meiothermus silvanus type strain (VI-R2).
Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847).
Complete genome sequence of Methanothermus fervidus type strain (V24S).
Complete genome sequence of Nakamurella multipartita type strain (Y-104).
Complete genome sequence of Neisseria meningitidis serogroup B strain MC58.
Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509).
Complete genome sequence of Oceanithermus profundus type strain (506).
Complete genome sequence of Odoribacter splanchnicus type strain (1651/6).
Complete genome sequence of Olsenella uli type strain (VPI D76D-27C).
Complete genome sequence of Paludibacter propionicigenes type strain (WB4).
Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3).
Complete genome sequence of Pirellula staleyi type strain (ATCC 27377).
Complete genome sequence of Planctomyces limnophilus type strain (Mü 290).
Complete genome sequence of Rhodothermus marinus type strain (R-10).
Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845).
Complete genome sequence of Saccharomonospora viridis type strain (P101).
Complete genome sequence of Sanguibacter keddieii type strain (ST-74).
Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300).
Complete genome sequence of Segniliparus rotundus type strain (CDC 1076).
Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1).
Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022).
Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228).
Complete genome sequence of Spirosoma linguale type strain (1).
Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21).
Complete genome sequence of Streptobacillus moniliformis type strain (9901).
Complete genome sequence of Streptosporangium roseum type strain (NI 9100).
Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).
Complete genome sequence of Sulfurospirillum deleyianum type strain (5175).
Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1).
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum.
Complete Genome Sequence of the Broad-Host-Range Vibriophage KVP40: Comparative Genomics of a T4-Related Bacteriophage
Complete Genome Sequence of the Oral Pathogenic Bacterium Porphyromonas gingivalis Strain W83
Complete genome sequence of the Q-fever pathogen Coxiella burnetii.
Complete genome sequence of Thermaerobacter marianensis type strain (7p75a).
Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883).
Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1).
Complete genome sequence of Thermobispora bispora type strain (R51).
Complete genome sequence of Thermocrinis albus type strain (HI 11/12).
Complete genome sequence of Thermomonospora curvata type strain (B9).
Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P).
Complete genome sequence of Thermosphaera aggregans type strain (M11TL).
Complete genome sequence of Truepera radiovictrix type strain (RQ-24).
Complete genome sequence of Veillonella parvula type strain (Te3).
Complete genome sequence of Vulcanisaeta distributa type strain (IC-017).
Complete genome sequence of Weeksella virosa type strain (9751).
Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07).
cut above: discovery of an alternative excision repair pathway in bacteria., A
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae.
Environmental genome shotgun sequencing of the Sargasso Sea.
Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes.
Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246).
Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377).
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.
Evidence for symmetric chromosomal inversions around the replication origin in bacteria.
evolution of DNA repair genes, proteins, and processes, The
Evolution of sensory complexity recorded in a myxobacterial genome.
Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions.
Gastrogenomic delights: A movable feast
Gastrogenomics
Gene synteny and evolution of genome architecture in trypanosomatids.
Genetic and physical mapping of DNA replication origins in Haloferax volcanii.
Genetic Data Environment. A user modifiable and expandable multiple sequence analysis package., The
Genetic Data Environment, The : A User Modifiable and Expandable Multiple Sequence Analysis Package
Genome data: what do we learn?
Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.
genome of the natural genetic engineer Agrobacterium tumefaciens C58., The
genome of Thermotoga maritima MSB8, The
genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria., The
genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments., The
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.
genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough., The
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.
Genome sequence of the human malaria parasite Plasmodium falciparum.
Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes.
Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.
genome sequence of Vibrio cholerae, the etiologic agent of cholera, The
Genome sequences of Chlamydia trachomatis MoPn and C. pneumoniae AR39
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.
Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales.
genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans, A
Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus capsulatus (Bath)
Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon
Genomics of emerging infectious disease: A PLoS collection.
Going to extremes. Archaea: bridging the gap between bacteria and eukarya (A Keystone Symposia), Taos, NM, USA, 9-14 January 1999.
Horizontal gene transfer among microbial genomes: new insights from complete genome analysis.
Human gut microbiome adopts an alternative state following small bowel transplantation
Identification of a fourth family of lycopene cyclases in photosynthetic bacteria
In silico-initiated cloning and molecular characterization of a novel human member of the L1 gene family of neural cell adhesion molecules.
Introducing W.A.T.E.R.S.: a workflow for the alignment, taxonomy, and ecology of ribosomal sequences.
Lateral gene transfer or viral colonization?
Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.
Mechanistic basis of microsatellite instability
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project.
Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters
Metagenomic sequencing of an in vitro-simulated microbial community.
Microbial genes in the human genome: lateral transfer or gene loss?
Microbial genome sequencing 2000: new insights into physiology, evolution and expression analysis.
Modeling bacterial evolution with comparative-genome-based marker systems: application to Mycobacterium tuberculosis evolution and pathogenesis.
New evolutionary frontiers from unusual virus genomes.
Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3).
Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139).
On the taxonomic status of the intracellular bacterium Wolbachia pipientis: should this species name include the intracellular bacteria of filarial nematodes?
Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella
Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207).
Phylogenetic analysis and gene functional predictions: phylogenomics in action.
Phylogenetic relationships of chemoautotrophic bacterial symbionts of Solemya velum Say (Mollusca: Bivalvia) determined by 16S rRNA gene sequence analysis.
phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based upon their RecA sequences, The
phylogenomic study of DNA repair genes, proteins, and processes., A
phylogenomic study of the MutS family of proteins, A
Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis
Phylogenomics: Intersection of evolution and genomics
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.
phylogeny-driven genomic encyclopaedia of Bacteria and Archaea, A
PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data
PLoS Biology 2.0.
recA mutations that reduce the constitutive coprotease activity of the RecA1202(Prtc) protein: possible involvement of interfilament association in proteolytic and recombination activities.
RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species., The
RecA Protein as a Model Molecule for Molecular Systematic Studies of Bacteria, The : Comparison of Trees of RecAs and 16S rRNAs from the Same Species
Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure.
Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis.
Second gene for gonadotropin-releasing hormone in humans
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.
Sequence and drug susceptibility of subtype C reverse transcriptase from human immunodeficiency virus type 1 seroconverters in Zimbabwe.
Sequence Characterization and Comparative Analysis of Three Plasmids Isolated from Environmental Vibrio spp.
Sequence similarity of putative transposases links the maize Mutator autonomous element and a group of bacterial insertion sequences.
Sequenced strains must be saved from extinction
Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugia malayi
simple, fast, and accurate method of phylogenomic inference., A
Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families, The
Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific, The
Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees.
Systems for expression of heterologous proteins in M. capsulatus
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).
TIGRFAMs: a protein family resource for the functional identification of proteins
Unsuspected diversity among marine aerobic anoxygenic phototrophs.
Use of HAPPY mapping for the higher order assembly of the Tetrahymena genome.
value of complete microbial genome sequencing (you get what you pay for), The
Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains
Contributed to or performed: 
CURRENT OPINION IN MICROBIOLOGY
GENOME RESEARCH
JOURNAL OF MOLECULAR EVOLUTION
METHODS IN MOLECULAR BIOLOGY -CLIFTON THEN TOTOWA-
PLOS BIOLOGY
Notes: 
Sources: 
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